Source code for toil.test.options.options

from configargparse import ArgParser

from toil.common import addOptions, Toil
from toil.test import ToilTest




class OptionsTest(ToilTest):
    """
    Class to test functionality of all Toil options
    """


    def test_default_caching_slurm(self):
        """
        Test to ensure that caching will be set to false when running on Slurm
        :return:
        """
        parser = ArgParser()
        addOptions(parser, jobstore_as_flag=True, wdl=False, cwl=False)
        test_args = ["--jobstore=example-jobstore", "--batchSystem=slurm"]
        options = parser.parse_args(test_args)
        with Toil(options) as toil:
            caching_value = toil.config.caching
        self.assertEqual(caching_value, False)




    def test_caching_option_priority(self):
        """
        Test to ensure that the --caching option takes priority over the default_caching() return value
        :return:
        """
        parser = ArgParser()
        addOptions(parser, jobstore_as_flag=True, wdl=False, cwl=False)
        # the kubernetes batchsystem (and I think all batchsystems including singlemachine) return False
        # for default_caching
        test_args = ["--jobstore=example-jobstore", "--batchSystem=kubernetes", "--caching=True"]
        options = parser.parse_args(test_args)
        with Toil(options) as toil:
            caching_value = toil.config.caching
        self.assertEqual(caching_value, True)