Toil Documentation¶
Toil is an open-source pure-Python workflow engine that lets people write better pipelines.
Check out our website for a comprehensive list of Toil’s features and read our paper to learn what Toil can do in the real world. Feel free to also join us on GitHub and Gitter.
- Overview
- Developing a Workflow
- Scripting quick start
- Job basics
- Invoking a workflow
- Specifying arguments via the command line
- Resuming a workflow
- Functions and job functions
- Workflows with multiple jobs
- Dynamic job creation
- Promises
- Promised Requirements
- FileID
- Managing files within a workflow
- Using Docker containers in Toil
- Services
- Checkpoints
- Encapsulation
- Depending on Toil
- Best practices for Dockerizing Toil workflows
- Toil API
- Batch System API
- Job Store API