Exceptions API

Toil specific exceptions.

exception toil.job.JobException(message)

General job exception.

__init__(message)

Initialize self. See help(type(self)) for accurate signature.

exception toil.job.JobGraphDeadlockException(string)

An exception raised in the event that a workflow contains an unresolvable dependency, such as a cycle. See toil.job.Job.checkJobGraphForDeadlocks().

__init__(string)

Initialize self. See help(type(self)) for accurate signature.

exception toil.jobStores.abstractJobStore.ConcurrentFileModificationException(jobStoreFileID)

Indicates that the file was attempted to be modified by multiple processes at once.

__init__(jobStoreFileID)

Parameters:jobStoreFileID (str) – the ID of the file that was modified by multiple workers or processes concurrently

exception toil.jobStores.abstractJobStore.JobStoreExistsException(locator)

Indicates that the specified job store already exists.

__init__(locator)

Initialize self. See help(type(self)) for accurate signature.

exception toil.jobStores.abstractJobStore.NoSuchFileException(jobStoreFileID, customName=None, *extra)

Indicates that the specified file does not exist.

__init__(jobStoreFileID, customName=None, *extra)

Parameters:

• jobStoreFileID (str) – the ID of the file that was mistakenly assumed to exist
• customName (str) – optionally, an alternate name for the nonexistent file
• extra (list) – optional extra information to add to the error message

exception toil.jobStores.abstractJobStore.NoSuchJobException(jobStoreID)

Indicates that the specified job does not exist.

__init__(jobStoreID)

Parameters:jobStoreID (str) – the jobStoreID that was mistakenly assumed to exist

exception toil.jobStores.abstractJobStore.NoSuchJobStoreException(locator)

Indicates that the specified job store does not exist.

__init__(locator)

Initialize self. See help(type(self)) for accurate signature.