toil.test.src.userDefinedJobArgTypeTest
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Module Contents¶
Classes¶
Test for issue #423 (Toil can't unpickle classes defined in user scripts) and variants |
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Class represents a unit of work in toil. |
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Functions¶
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- class toil.test.src.userDefinedJobArgTypeTest.UserDefinedJobArgTypeTest(methodName='runTest')¶
Bases:
toil.test.ToilTest
Test for issue #423 (Toil can’t unpickle classes defined in user scripts) and variants thereof.
https://github.com/BD2KGenomics/toil/issues/423
- setUp()¶
Hook method for setting up the test fixture before exercising it.
- testJobFunction()¶
Test with first job being a function
- testJobClass()¶
Test with first job being an instance of a class
- testJobFunctionFromMain()¶
Test with first job being a function defined in __main__
- testJobClassFromMain()¶
Test with first job being an instance of a class defined in __main__
- class toil.test.src.userDefinedJobArgTypeTest.JobClass(level, foo)¶
Bases:
toil.job.Job
Class represents a unit of work in toil.
- run(fileStore)¶
Override this function to perform work and dynamically create successor jobs.
- Parameters
fileStore – Used to create local and globally sharable temporary files and to send log messages to the leader process.
- Returns
The return value of the function can be passed to other jobs by means of
toil.job.Job.rv()
.
- toil.test.src.userDefinedJobArgTypeTest.jobFunction(job, level, foo)¶
- toil.test.src.userDefinedJobArgTypeTest.main()¶