Exceptions API
Toil specific exceptions.
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exception
toil.job.
JobException
(message)[source]
General job exception.
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__init__
(message)[source]
Initialize self. See help(type(self)) for accurate signature.
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exception
toil.job.
JobGraphDeadlockException
(string)[source]
An exception raised in the event that a workflow contains an unresolvable dependency, such as a cycle. See toil.job.Job.checkJobGraphForDeadlocks()
.
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__init__
(string)[source]
Initialize self. See help(type(self)) for accurate signature.
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exception
toil.jobStores.abstractJobStore.
ConcurrentFileModificationException
(jobStoreFileID: toil.fileStores.FileID)[source]
Indicates that the file was attempted to be modified by multiple processes at once.
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__init__
(jobStoreFileID: toil.fileStores.FileID)[source]
Parameters: | jobStoreFileID (str) – the ID of the file that was modified by multiple workers
or processes concurrently |
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exception
toil.jobStores.abstractJobStore.
JobStoreExistsException
(locator: str)[source]
Indicates that the specified job store already exists.
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__init__
(locator: str)[source]
Parameters: | locator (str) – The location of the job store |
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exception
toil.jobStores.abstractJobStore.
NoSuchFileException
(jobStoreFileID: toil.fileStores.FileID, customName: Optional[str] = None, *extra)[source]
Indicates that the specified file does not exist.
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__init__
(jobStoreFileID: toil.fileStores.FileID, customName: Optional[str] = None, *extra)[source]
Parameters: |
- jobStoreFileID (str) – the ID of the file that was mistakenly assumed to exist
- customName (str) – optionally, an alternate name for the nonexistent file
- extra (list) – optional extra information to add to the error message
|
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exception
toil.jobStores.abstractJobStore.
NoSuchJobException
(jobStoreID: toil.fileStores.FileID)[source]
Indicates that the specified job does not exist.
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__init__
(jobStoreID: toil.fileStores.FileID)[source]
Parameters: | jobStoreID (str) – the jobStoreID that was mistakenly assumed to exist |
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exception
toil.jobStores.abstractJobStore.
NoSuchJobStoreException
(locator: str)[source]
Indicates that the specified job store does not exist.
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__init__
(locator: str)[source]
Parameters: | locator (str) – The location of the job store |