tutorial_managing

Module Contents

Classes

LocalFileStoreJob

Class represents a unit of work in toil.

Attributes

jobstore

class tutorial_managing.LocalFileStoreJob(memory=None, cores=None, disk=None, accelerators=None, preemptible=None, preemptable=None, unitName='', checkpoint=False, displayName='', descriptionClass=None, local=None)

Bases: toil.job.Job

Class represents a unit of work in toil.

Parameters:

  • memory (Optional[ParseableIndivisibleResource]) –

  • cores (Optional[ParseableDivisibleResource]) –

  • disk (Optional[ParseableIndivisibleResource]) –

  • accelerators (Optional[ParseableAcceleratorRequirement]) –

  • preemptible (Optional[ParseableFlag]) –

  • preemptable (Optional[ParseableFlag]) –

  • unitName (Optional[str]) –

  • checkpoint (Optional[bool]) –

  • displayName (Optional[str]) –

  • descriptionClass (Optional[type]) –

  • local (Optional[bool]) –

run(fileStore)

Override this function to perform work and dynamically create successor jobs.

Parameters:

fileStore – Used to create local and globally sharable temporary files and to send log messages to the leader process.

Returns:

The return value of the function can be passed to other jobs by means of toil.job.Job.rv().

tutorial_managing.jobstore: str