All modules for which code is available

toil.batchSystems.abstractBatchSystem
toil.common
toil.fileStore
toil.job
toil.jobStores.abstractJobStore

Table Of Contents

Getting Started

Overview
Installation
Quickstart Examples

Running Toil

Overview
Toil Workflow Options and Command Line Interface
CWL in Toil
Deploying a Workflow
Running in AWS
Running in Azure
Running in Openstack
Running in GCE
Running in HPC Environments

Developing Toil Workflows

Overview
Developing a Workflow
Toil API
Batch System API
Job Store API

Contributing to Toil

Overview
Running tests
Developing with the Toil Appliance
Maintainer’s Guidelines

Appendices

Toil Architecture
Toil Environment Variables

Related Topics

Documentation overview

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