tutorial_managing

Module Contents

Classes

LocalFileStoreJob

Class represents a unit of work in toil.

Attributes

jobstore

class tutorial_managing.LocalFileStoreJob(memory=None, cores=None, disk=None, accelerators=None, preemptible=None, preemptable=None, unitName='', checkpoint=False, displayName='', descriptionClass=None, local=None)

Bases: toil.job.Job

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Class represents a unit of work in toil.

Parameters

  • memory (Optional[ParseableIndivisibleResource]) –

  • cores (Optional[ParseableDivisibleResource]) –

  • disk (Optional[ParseableIndivisibleResource]) –

  • accelerators (Optional[ParseableAcceleratorRequirement]) –

  • preemptible (Optional[ParseableFlag]) –

  • preemptable (Optional[ParseableFlag]) –

  • unitName (Optional[str]) –

  • checkpoint (Optional[bool]) –

  • displayName (Optional[str]) –

  • descriptionClass (Optional[type]) –

  • local (Optional[bool]) –

run(fileStore)

Override this function to perform work and dynamically create successor jobs.

Parameters

fileStore – Used to create local and globally sharable temporary files and to send log messages to the leader process.

Returns

The return value of the function can be passed to other jobs by means of toil.job.Job.rv().

tutorial_managing.jobstore: str