toil.test.wdl.wdltoil_test
¶
Module Contents¶
Classes¶
New WDL conformance tests for Toil |
|
Version of the old Toil WDL tests that tests the new MiniWDL-based implementation. |
- class toil.test.wdl.wdltoil_test.ToilConformanceTests(methodName='runTest')[source]¶
Bases:
digraph inheritance1743ad378d { bgcolor=transparent; rankdir=LR; size="8.0, 12.0"; "BaseToilWdlTest" [URL="../toilwdlTest/index.html#toil.test.wdl.toilwdlTest.BaseToilWdlTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Base test class for WDL tests"]; "ToilTest" -> "BaseToilWdlTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; "TestCase" [fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",tooltip="A class whose instances are single test cases."]; "ToilConformanceTests" [URL="#toil.test.wdl.wdltoil_test.ToilConformanceTests",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="New WDL conformance tests for Toil"]; "BaseToilWdlTest" -> "ToilConformanceTests" [arrowsize=0.5,style="setlinewidth(0.5)"]; "ToilTest" [URL="../../index.html#toil.test.ToilTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="A common base class for Toil tests."]; "TestCase" -> "ToilTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; }toil.test.wdl.toilwdlTest.BaseToilWdlTest
New WDL conformance tests for Toil
- wdl_dir = 'wdl-conformance-tests'¶
- class toil.test.wdl.wdltoil_test.WdlToilTest(methodName='runTest')[source]¶
Bases:
digraph inheritance3f8891d249 { bgcolor=transparent; rankdir=LR; size="8.0, 12.0"; "BaseToilWdlTest" [URL="../toilwdlTest/index.html#toil.test.wdl.toilwdlTest.BaseToilWdlTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Base test class for WDL tests"]; "ToilTest" -> "BaseToilWdlTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; "TestCase" [fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",tooltip="A class whose instances are single test cases."]; "ToilTest" [URL="../../index.html#toil.test.ToilTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="A common base class for Toil tests."]; "TestCase" -> "ToilTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; "ToilWdlTest" [URL="../toilwdlTest/index.html#toil.test.wdl.toilwdlTest.ToilWdlTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="General tests for Toil WDL"]; "BaseToilWdlTest" -> "ToilWdlTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; "WdlToilTest" [URL="#toil.test.wdl.wdltoil_test.WdlToilTest",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Version of the old Toil WDL tests that tests the new MiniWDL-based implementation."]; "ToilWdlTest" -> "WdlToilTest" [arrowsize=0.5,style="setlinewidth(0.5)"]; }toil.test.wdl.toilwdlTest.ToilWdlTest
Version of the old Toil WDL tests that tests the new MiniWDL-based implementation.
- testMD5sum()[source]¶
Test if Toil produces the same outputs as known good outputs for WDL’s GATK tutorial #1.
- test_miniwdl_self_test()[source]¶
Test if the MiniWDL self test runs and produces the expected output.