toil.exceptions

Neutral place for exceptions, to break import cycles.

Attributes

logger

Exceptions

FailedJobsException

Common base class for all non-exit exceptions.

Module Contents

toil.exceptions.logger

exception toil.exceptions.FailedJobsException(job_store, failed_jobs, exit_code=1)

Bases: Exception

Common base class for all non-exit exceptions.

Parameters:

• job_store (toil.jobStores.abstractJobStore.AbstractJobStore)

• failed_jobs (list[toil.job.JobDescription])

• exit_code (int)

msg

exit_code = 1

jobStoreLocator

numberOfFailedJobs

__str__()

Stringify the exception, including the message.

Return type:

str