toil.lib¶

Submodules¶

  • toil.lib.accelerators
  • toil.lib.aws
  • toil.lib.bioio
  • toil.lib.compatibility
  • toil.lib.conversions
  • toil.lib.docker
  • toil.lib.dockstore
  • toil.lib.ec2
  • toil.lib.ec2nodes
  • toil.lib.encryption
  • toil.lib.exceptions
  • toil.lib.expando
  • toil.lib.ftp_utils
  • toil.lib.generatedEC2Lists
  • toil.lib.history
  • toil.lib.history_submission
  • toil.lib.humanize
  • toil.lib.io
  • toil.lib.iterables
  • toil.lib.memoize
  • toil.lib.misc
  • toil.lib.objects
  • toil.lib.plugins
  • toil.lib.resources
  • toil.lib.retry
  • toil.lib.threading
  • toil.lib.throttle
  • toil.lib.trs
  • toil.lib.url
  • toil.lib.web

Logo of Toil

Toil

Navigation

Getting Started

  • Installation
  • Quickstart Examples

Common Workflow Language (CWL)

  • CWL in Toil
  • Running CWL Workflows
  • CWL Conformance

Workflow Description Language (WDL)

  • WDL in Toil
  • Running WDL Workflows
  • Developing WDL Workflows
  • WDL Conformance
  • WDL Tutorial

Advanced Toil Usage

  • Introduction
  • Commandline Options
  • Toil Utilities
  • Toil Debugging
  • Running in the Cloud
  • Cloud Platforms
  • HPC Environments
  • Workflow Execution Service (WES)

Toil Python API

  • Developing a Python Workflow
  • Toil Class API
  • Job Store API
  • Toil Job API
  • Job Methods API
  • Job.Runner API
  • job.fileStore API
  • Batch System API
  • Job.Service API
  • Exceptions API

Contributing to Toil

  • Running Tests
  • Developing with Docker
  • Maintainer’s Guidelines
  • Pull Request Checklists

Appendices

  • Toil Architecture
  • Minimum AWS IAM permissions
  • Auto-Deployment
  • Environment Variables
  • API Reference
    • toil
      • Submodules
        • toil.batchSystems
        • toil.bus
        • toil.common
        • toil.cwl
        • toil.deferred
        • toil.exceptions
        • toil.fileStores
        • toil.job
        • toil.jobStores
        • toil.leader
        • toil.lib
          • Submodules
            • toil.lib.accelerators
            • toil.lib.aws
            • toil.lib.bioio
            • toil.lib.compatibility
            • toil.lib.conversions
            • toil.lib.docker
            • toil.lib.dockstore
            • toil.lib.ec2
            • toil.lib.ec2nodes
            • toil.lib.encryption
            • toil.lib.exceptions
            • toil.lib.expando
            • toil.lib.ftp_utils
            • toil.lib.generatedEC2Lists
            • toil.lib.history
            • toil.lib.history_submission
            • toil.lib.humanize
            • toil.lib.io
            • toil.lib.iterables
            • toil.lib.memoize
            • toil.lib.misc
            • toil.lib.objects
            • toil.lib.plugins
            • toil.lib.resources
            • toil.lib.retry
            • toil.lib.threading
            • toil.lib.throttle
            • toil.lib.trs
            • toil.lib.url
            • toil.lib.web
        • toil.options
        • toil.provisioners
        • toil.realtimeLogger
        • toil.resource
        • toil.server
        • toil.serviceManager
        • toil.statsAndLogging
        • toil.test
        • toil.toilState
        • toil.utils
        • toil.version
        • toil.wdl
        • toil.worker
      • Attributes
      • Exceptions
      • Functions
      • Package Contents

Related Topics

  • Documentation overview
    • API Reference
      • toil
        • Previous: toil.leader
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