toil.fileStores

Submodules

Package Contents

Classes

FileID

A small wrapper around Python's builtin string class.
class toil.fileStores.FileID(fileStoreID, size, executable=False)[source]

Bases: str

A small wrapper around Python’s builtin string class.

It is used to represent a file’s ID in the file store, and has a size attribute that is the file’s size in bytes. This object is returned by importFile and writeGlobalFile.

Calls into the file store can use bare strings; size will be queried from the job store if unavailable in the ID.

Parameters:
pack()[source]

Pack the FileID into a string so it can be passed through external code.

Return type:

str

classmethod forPath(fileStoreID, filePath)[source]
Parameters:

  • fileStoreID (str)

  • filePath (str)

Return type:

FileID

classmethod unpack(packedFileStoreID)[source]

Unpack the result of pack() into a FileID object.

Parameters:

packedFileStoreID (str)

Return type:

FileID