toil.test.src.resourceTest

Module Contents

Classes

ResourceTest

Test module descriptors and resources derived from them.

Functions

tempFileContaining(content[, suffix])

Write a file with the given contents, and keep it on disk as long as the context is active.
toil.test.src.resourceTest.tempFileContaining(content, suffix='')[source]

Write a file with the given contents, and keep it on disk as long as the context is active. :param str content: The contents of the file. :param str suffix: The extension to use for the temporary file.

class toil.test.src.resourceTest.ResourceTest(methodName='runTest')[source]

Bases: toil.test.ToilTest

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Test module descriptors and resources derived from them.

testStandAlone()[source]
testPackage()[source]
testVirtualEnv()[source]
testStandAloneInPackage()[source]
testBuiltIn()[source]
testNonPyStandAlone()[source]

Asserts that Toil enforces the user script to have a .py or .pyc extension because that’s the only way auto-deployment can re-import the module on a worker. See

https://github.com/BD2KGenomics/toil/issues/631 and https://github.com/BD2KGenomics/toil/issues/858