toil.test.src.userDefinedJobArgTypeTest

Module Contents

Classes

UserDefinedJobArgTypeTest	Test for issue #423 (Toil can't unpickle classes defined in user scripts) and variants
JobClass	Class represents a unit of work in toil.
Foo

Functions

jobFunction(job, level, foo)
main()

class toil.test.src.userDefinedJobArgTypeTest.UserDefinedJobArgTypeTest(methodName='runTest')

Bases: toil.test.ToilTest

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Test for issue #423 (Toil can’t unpickle classes defined in user scripts) and variants thereof.

https://github.com/BD2KGenomics/toil/issues/423

setUp()

Hook method for setting up the test fixture before exercising it.

testJobFunction()

Test with first job being a function

testJobClass()

Test with first job being an instance of a class

testJobFunctionFromMain()

Test with first job being a function defined in __main__

testJobClassFromMain()

Test with first job being an instance of a class defined in __main__

class toil.test.src.userDefinedJobArgTypeTest.JobClass(level, foo)

Bases: toil.job.Job

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Class represents a unit of work in toil.

run(fileStore)

Override this function to perform work and dynamically create successor jobs.

Parameters

fileStore – Used to create local and globally sharable temporary files and to send log messages to the leader process.

Returns

The return value of the function can be passed to other jobs by means of toil.job.Job.rv().

toil.test.src.userDefinedJobArgTypeTest.jobFunction(job, level, foo)

class toil.test.src.userDefinedJobArgTypeTest.Foo

assertIsCopy()

toil.test.src.userDefinedJobArgTypeTest.main()