# Copyright (C) 2015-2021 Regents of the University of California
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Launches a toil leader instance with the specified provisioner."""
import logging
import os
from typing import Dict, List, Tuple, Union
from toil import applianceSelf
from toil.common import parser_with_common_options
from toil.lib.aws import build_tag_dict_from_env
from toil.provisioners import (check_valid_node_types,
cluster_factory,
parse_node_types)
from toil.statsAndLogging import set_logging_from_options
logger = logging.getLogger(__name__)
[docs]
def main() -> None:
parser = parser_with_common_options(provisioner_options=True, jobstore_option=False)
parser.add_argument("-T", "--clusterType", dest="clusterType",
choices=['mesos', 'kubernetes'],
default=None, # TODO: change default to "kubernetes" when we are ready.
help="Cluster scheduler to use.")
parser.add_argument("--leaderNodeType", dest="leaderNodeType", required=True,
help="Non-preemptible node type to use for the cluster leader.")
parser.add_argument("--keyPairName", dest='keyPairName',
help="On AWS, the name of the AWS key pair to include on the instance."
" On Google/GCE, this is the ssh key pair.")
parser.add_argument("--owner", dest='owner',
help="The owner tag for all instances. If not given, the value in"
"TOIL_OWNER_TAG will be used, or else the value of --keyPairName.")
parser.add_argument("--boto", dest='botoPath',
help="The path to the boto credentials directory. This is transferred "
"to all nodes in order to access the AWS jobStore from non-AWS instances.")
parser.add_argument("-t", "--tag", metavar='NAME=VALUE', dest='tags',
default=[], action='append',
help="Tags are added to the AWS cluster for this node and all of its "
"children. Tags are of the form:\n"
" -t key1=value1 --tag key2=value2\n"
"Multiple tags are allowed and each tag needs its own flag. By "
"default the cluster is tagged with "
" {\n"
" \"Name\": clusterName,\n"
" \"Owner\": IAM username\n"
" }. ")
parser.add_argument("--network",
help="GCE cloud network to use. default: 'default'")
parser.add_argument("--vpcSubnet",
help="VPC subnet ID to launch cluster leader in. Uses default subnet "
"if not specified. This subnet needs to have auto assign IPs turned on.")
parser.add_argument("--use_private_ip", dest="use_private_ip", action='store_true', default=False,
help="if specified, ignore the public ip of the nodes")
parser.add_argument("--nodeTypes", dest='nodeTypes', default=None, type=str,
help="Specifies a list of comma-separated node types, each of which is "
"composed of slash-separated instance types, and an optional spot "
"bid set off by a colon, making the node type preemptible. Instance "
"types may appear in multiple node types, and the same node type "
"may appear as both preemptible and non-preemptible.\n"
"Valid argument specifying two node types:\n"
"\tc5.4xlarge/c5a.4xlarge:0.42,t2.large\n"
"Node types:\n"
"\tc5.4xlarge/c5a.4xlarge:0.42 and t2.large\n"
"Instance types:\n"
"\tc5.4xlarge, c5a.4xlarge, and t2.large\n"
"Semantics:\n"
"\tBid $0.42/hour for either c5.4xlarge or c5a.4xlarge instances,\n"
"\ttreated interchangeably, while they are available at that price,\n"
"\tand buy t2.large instances at full price\n"
"Must also provide the --workers argument to specify how many "
"workers of each node type to create.")
parser.add_argument("-w", "--workers", dest='workers', default=None, type=str,
help="Comma-separated list of the ranges of numbers of workers of each "
"node type to launch, such as '0-2,5,1-3'. If a range is given, "
"workers will automatically be launched and terminated by the cluster "
"to auto-scale to the workload.")
parser.add_argument("--leaderStorage", dest='leaderStorage', type=int, default=50,
help="Specify the size (in gigabytes) of the root volume for the leader "
"instance. This is an EBS volume.")
parser.add_argument("--nodeStorage", dest='nodeStorage', type=int, default=50,
help="Specify the size (in gigabytes) of the root volume for any worker "
"instances created when using the -w flag. This is an EBS volume.")
parser.add_argument('--forceDockerAppliance', dest='forceDockerAppliance', action='store_true',
default=False,
help="Disables sanity checking the existence of the docker image specified "
"by TOIL_APPLIANCE_SELF, which Toil uses to provision mesos for "
"autoscaling.")
parser.add_argument('--awsEc2ProfileArn', dest='awsEc2ProfileArn', default=None, type=str,
help="If provided, the specified ARN is used as the instance profile for EC2 instances."
"Useful for setting custom IAM profiles. If not specified, a new IAM role is created "
"by default with sufficient access to perform basic cluster operations.")
parser.add_argument('--awsEc2ExtraSecurityGroupId', dest='awsEc2ExtraSecurityGroupIds', default=[], action='append',
help="Any additional security groups to attach to EC2 instances. Note that a security group "
"with its name equal to the cluster name will always be created, thus ensure that "
"the extra security groups do not have the same name as the cluster name.")
#TODO Set Aws Profile in CLI options
options = parser.parse_args()
set_logging_from_options(options)
tags = create_tags_dict(options.tags) if options.tags else build_tag_dict_from_env()
# Get worker node types
worker_node_types = parse_node_types(options.nodeTypes)
check_valid_node_types(options.provisioner, worker_node_types + [({options.leaderNodeType}, None)])
# Holds string ranges, like "5", or "3-10"
worker_node_ranges = options.workers.split(',') if options.workers else []
# checks the validity of TOIL_APPLIANCE_SELF before proceeding
applianceSelf(forceDockerAppliance=options.forceDockerAppliance)
# This holds either ints to launch static nodes, or tuples of ints
# specifying ranges to launch managed auto-scaling nodes, for each type.
nodeCounts: List[Union[int, Tuple[int, int]]] = []
if ((worker_node_types != [] or worker_node_ranges != []) and not
(worker_node_types != [] and worker_node_ranges != [])):
raise RuntimeError("The --nodeTypes option requires --workers, and visa versa.")
if worker_node_types and worker_node_ranges:
if not len(worker_node_types) == len(worker_node_ranges):
raise RuntimeError("List of worker count ranges must be the same length as the list of node types.")
for spec in worker_node_ranges:
if '-' in spec:
# Provision via autoscaling
parts = spec.split('-')
if len(parts) != 2:
raise RuntimeError("Unacceptable range: " + spec)
nodeCounts.append((int(parts[0]), int(parts[1])))
else:
# Provision fixed nodes
nodeCounts.append(int(spec))
owner = options.owner or os.getenv('TOIL_OWNER_TAG') or options.keyPairName or 'toil'
# Check to see if the user specified a zone. If not, see if one is stored in an environment variable.
options.zone = options.zone or os.environ.get(f'TOIL_{options.provisioner.upper()}_ZONE')
if not options.zone:
raise RuntimeError(f'Please provide a value for --zone or set a default in the '
f'TOIL_{options.provisioner.upper()}_ZONE environment variable.')
if options.clusterType == "mesos":
logger.warning('You are using a Mesos cluster, which is no longer recommended as Toil is '
'transitioning to Kubernetes-based clusters. Consider switching to '
'--clusterType=kubernetes instead.')
if options.clusterType is None:
logger.warning('Argument --clusterType is not set... using "mesos". '
'In future versions of Toil, the default cluster scheduler will be '
'set to "kubernetes" if the cluster type is not specified.')
options.clusterType = "mesos"
logger.info('Creating cluster %s...', options.clusterName)
cluster = cluster_factory(provisioner=options.provisioner,
clusterName=options.clusterName,
clusterType=options.clusterType,
zone=options.zone,
nodeStorage=options.nodeStorage)
cluster.launchCluster(leaderNodeType=options.leaderNodeType,
leaderStorage=options.leaderStorage,
owner=owner,
keyName=options.keyPairName,
botoPath=options.botoPath,
userTags=tags,
network=options.network,
vpcSubnet=options.vpcSubnet,
awsEc2ProfileArn=options.awsEc2ProfileArn,
awsEc2ExtraSecurityGroupIds=options.awsEc2ExtraSecurityGroupIds)
for typeNum, spec in enumerate(nodeCounts):
# For each batch of workers to make
wanted = worker_node_types[typeNum]
if isinstance(spec, int):
# Make static nodes
if spec == 0:
# Don't make anything
continue
if wanted[1] is None:
# Make non-spot instances
cluster.addNodes(nodeTypes=wanted[0], numNodes=spec, preemptible=False)
else:
# We have a spot bid
cluster.addNodes(nodeTypes=wanted[0], numNodes=spec, preemptible=True,
spotBid=wanted[1])
elif isinstance(spec, tuple):
# Make a range of auto-scaling nodes
max_count, min_count = spec
if max_count < min_count:
# Flip them around
min_count, max_count = max_count, min_count
if max_count == 0:
# Don't want any
continue
if wanted[1] is None:
# Make non-spot instances
cluster.addManagedNodes(nodeTypes=wanted[0], minNodes=min_count, maxNodes=max_count,
preemptible=False)
else:
# Bid at the given price.
cluster.addManagedNodes(nodeTypes=wanted[0], minNodes=min_count, maxNodes=max_count,
preemptible=True, spotBid=wanted[1])
logger.info('Cluster created successfully.')
