All modules for which code is available
- logging
- setuptools.extern.packaging.version
- toil
- toil.batchSystems
- toil.batchSystems.abstractBatchSystem
- toil.batchSystems.abstractGridEngineBatchSystem
- toil.batchSystems.cleanup_support
- toil.batchSystems.contained_executor
- toil.batchSystems.gridengine
- toil.batchSystems.local_support
- toil.batchSystems.lsf
- toil.batchSystems.lsfHelper
- toil.batchSystems.mesos
- toil.batchSystems.options
- toil.batchSystems.registry
- toil.batchSystems.singleMachine
- toil.batchSystems.slurm
- toil.batchSystems.torque
- toil.bus
- toil.common
- toil.cwl
- toil.deferred
- toil.exceptions
- toil.fileStores
- toil.fileStores.abstractFileStore
- toil.fileStores.cachingFileStore
- toil.fileStores.nonCachingFileStore
- toil.job
- toil.jobStores.abstractJobStore
- toil.jobStores.fileJobStore
- toil.jobStores.utils
- toil.leader
- toil.lib.accelerators
- toil.lib.aws
- toil.lib.bioio
- toil.lib.compatibility
- toil.lib.conversions
- toil.lib.docker
- toil.lib.ec2nodes
- toil.lib.encryption._dummy
- toil.lib.exceptions
- toil.lib.expando
- toil.lib.humanize
- toil.lib.io
- toil.lib.iterables
- toil.lib.memoize
- toil.lib.misc
- toil.lib.objects
- toil.lib.resources
- toil.lib.retry
- toil.lib.threading
- toil.lib.throttle
- toil.provisioners
- toil.provisioners.abstractProvisioner
- toil.provisioners.aws
- toil.provisioners.clusterScaler
- toil.provisioners.node
- toil.realtimeLogger
- toil.resource
- toil.server.utils
- toil.serviceManager
- toil.statsAndLogging
- toil.test
- toil.test.batchSystems.batchSystemTest
- toil.test.batchSystems.test_lsf_helper
- toil.test.batchSystems.test_slurm
- toil.test.docs.scriptsTest
- toil.test.lib.aws.test_utils
- toil.test.lib.dockerTest
- toil.test.lib.test_conversions
- toil.test.lib.test_misc
- toil.test.mesos.MesosDataStructuresTest
- toil.test.mesos.helloWorld
- toil.test.mesos.stress
- toil.test.provisioners.clusterScalerTest
- toil.test.provisioners.gceProvisionerTest
- toil.test.provisioners.provisionerTest
- toil.test.provisioners.restartScript
- toil.test.server.serverTest
- toil.test.sort.restart_sort
- toil.test.sort.sort
- toil.test.sort.sortTest
- toil.test.src.autoDeploymentTest
- toil.test.src.busTest
- toil.test.src.checkpointTest
- toil.test.src.deferredFunctionTest
- toil.test.src.dockerCheckTest
- toil.test.src.fileStoreTest
- toil.test.src.helloWorldTest
- toil.test.src.importExportFileTest
- toil.test.src.jobDescriptionTest
- toil.test.src.jobEncapsulationTest
- toil.test.src.jobFileStoreTest
- toil.test.src.jobServiceTest
- toil.test.src.jobTest
- toil.test.src.miscTests
- toil.test.src.promisedRequirementTest
- toil.test.src.promisesTest
- toil.test.src.realtimeLoggerTest
- toil.test.src.regularLogTest
- toil.test.src.resourceTest
- toil.test.src.restartDAGTest
- toil.test.src.resumabilityTest
- toil.test.src.retainTempDirTest
- toil.test.src.systemTest
- toil.test.src.threadingTest
- toil.test.src.toilContextManagerTest
- toil.test.src.userDefinedJobArgTypeTest
- toil.test.src.workerTest
- toil.test.utils.toilDebugTest
- toil.test.utils.toilKillTest
- toil.toilState
- toil.utils.toilClean
- toil.utils.toilConfig
- toil.utils.toilDebugFile
- toil.utils.toilDebugJob
- toil.utils.toilDestroyCluster
- toil.utils.toilKill
- toil.utils.toilLaunchCluster
- toil.utils.toilMain
- toil.utils.toilRsyncCluster
- toil.utils.toilServer
- toil.utils.toilSshCluster
- toil.utils.toilStats
- toil.utils.toilStatus
- toil.utils.toilUpdateEC2Instances
- toil.wdl.utils
- toil.worker
