Source code for toil.utils.toilRsyncCluster
# Copyright (C) 2015-2021 Regents of the University of California
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Rsyncs into the toil appliance container running on the leader of the cluster."""
import argparse
import logging
import sys
from toil.common import parser_with_common_options
from toil.provisioners import NoSuchClusterException, cluster_factory
from toil.statsAndLogging import set_logging_from_options
logger = logging.getLogger(__name__)
[docs]
def main() -> None:
parser = parser_with_common_options(
provisioner_options=True, jobstore_option=False, prog="toil rsync-cluster"
)
parser.add_argument(
"--insecure",
dest="insecure",
action="store_true",
required=False,
help="Temporarily disable strict host key checking.",
)
parser.add_argument(
"args",
nargs=argparse.REMAINDER,
help="Arguments to pass to"
"`rsync`. Takes any arguments that rsync accepts. Specify the"
" remote with a colon. For example, to upload `example.py`,"
" specify `toil rsync-cluster -p aws test-cluster example.py :`."
"\nOr, to download a file from the remote:, `toil rsync-cluster"
" -p aws test-cluster :example.py .`",
)
options = parser.parse_args()
set_logging_from_options(options)
cluster = cluster_factory(
provisioner=options.provisioner,
clusterName=options.clusterName,
zone=options.zone,
)
try:
cluster.getLeader().coreRsync(args=options.args, strict=not options.insecure)
except NoSuchClusterException as e:
logger.error(e)
sys.exit(1)