toil.batchSystems.options¶
Attributes¶
Classes¶
Protocol for the setOption function we get to let us set up CLI options for |
Functions¶
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Call set_option for all the options for the given named batch system, or |
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Module Contents¶
- toil.batchSystems.options.logger¶
- class toil.batchSystems.options.OptionSetter[source]¶
Bases:
Protocol
Protocol for the setOption function we get to let us set up CLI options for each batch system.
Actual functionality is defined in the Config class.
- OptionType¶
- toil.batchSystems.options.set_batchsystem_options(batch_system, set_option)[source]¶
Call set_option for all the options for the given named batch system, or all batch systems if no name is provided.
- Parameters:
batch_system (Optional[str])
set_option (OptionSetter)
- Return type:
None
- toil.batchSystems.options.add_all_batchsystem_options(parser)[source]¶
- Parameters:
parser (Union[argparse.ArgumentParser, argparse._ArgumentGroup])
- Return type:
None