toil.lib¶

Subpackages¶

  • toil.lib.aws
    • toil.lib.aws.ami
    • toil.lib.aws.iam
    • toil.lib.aws.session
    • toil.lib.aws.utils
  • toil.lib.encryption
    • toil.lib.encryption.conftest

Submodules¶

  • toil.lib.accelerators
  • toil.lib.bioio
  • toil.lib.compatibility
  • toil.lib.conversions
  • toil.lib.docker
  • toil.lib.ec2
  • toil.lib.ec2nodes
  • toil.lib.exceptions
  • toil.lib.expando
  • toil.lib.generatedEC2Lists
  • toil.lib.humanize
  • toil.lib.io
  • toil.lib.iterables
  • toil.lib.memoize
  • toil.lib.misc
  • toil.lib.objects
  • toil.lib.resources
  • toil.lib.retry
  • toil.lib.threading
  • toil.lib.throttle

Logo

Toil

Navigation

Getting Started

  • Installation
  • Quickstart Examples

Running Toil

  • Introduction
  • Commandline Options
  • Toil Debugging
  • Running in the Cloud
  • Cloud Platforms
  • HPC Environments
  • CWL in Toil
  • WDL in Toil
  • Workflow Execution Service (WES)

Developing Toil Workflows

  • Developing a Workflow
  • Toil Class API
  • Job Store API
  • Toil Job API
  • Job Methods API
  • Job.Runner API
  • job.fileStore API
  • Batch System API
  • Job.Service API
  • Exceptions API

Contributing to Toil

  • Running Tests
  • Developing with Docker
  • Maintainer’s Guidelines
  • Pull Request Checklists

Appendices

  • Toil Architecture
  • Minimum AWS IAM permissions
  • Auto-Deployment
  • Environment Variables
  • API Reference
    • toil
      • Subpackages
        • toil.batchSystems
        • toil.cwl
        • toil.fileStores
        • toil.jobStores
        • toil.lib
          • Subpackages
            • toil.lib.aws
            • toil.lib.encryption
          • Submodules
            • toil.lib.accelerators
            • toil.lib.bioio
            • toil.lib.compatibility
            • toil.lib.conversions
            • toil.lib.docker
            • toil.lib.ec2
            • toil.lib.ec2nodes
            • toil.lib.exceptions
            • toil.lib.expando
            • toil.lib.generatedEC2Lists
            • toil.lib.humanize
            • toil.lib.io
            • toil.lib.iterables
            • toil.lib.memoize
            • toil.lib.misc
            • toil.lib.objects
            • toil.lib.resources
            • toil.lib.retry
            • toil.lib.threading
            • toil.lib.throttle
        • toil.provisioners
        • toil.server
        • toil.test
        • toil.utils
        • toil.wdl
      • Submodules
      • Package Contents
    • fake_mpi_run
    • debugWorkflow
    • mkFile
    • example_cachingbenchmark
    • tutorial_requirements
    • tutorial_invokeworkflow
    • tutorial_arguments
    • tutorial_helloworld
    • tutorial_encapsulation
    • tutorial_invokeworkflow2
    • tutorial_promises
    • example_alwaysfail
    • tutorial_multiplejobs3
    • tutorial_encapsulation2
    • tutorial_jobfunctions
    • tutorial_staging
    • tutorial_docker
    • tutorial_dynamic
    • tutorial_managing2
    • tutorial_managing
    • tutorial_cwlexample
    • tutorial_quickstart
    • tutorial_discoverfiles
    • tutorial_multiplejobs
    • tutorial_services
    • tutorial_promises2
    • tutorial_multiplejobs2

Related Topics

  • Documentation overview
    • API Reference
      • toil
        • Previous: toil.jobStores.utils
        • Next: toil.lib.aws

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