toil.test.lib.dockerTest¶
Attributes¶
Classes¶
Tests dockerCall and ensures no containers are left around. |
Module Contents¶
- toil.test.lib.dockerTest.logger¶
- class toil.test.lib.dockerTest.TestDocker¶
Tests dockerCall and ensures no containers are left around.
- dockerTestLogLevel = 'INFO'¶
- testDockerClean(tmp_path, caching=False, detached=True, rm=True, deferParam=None)¶
Run the test container that creates a file in the work dir, and sleeps for 5 minutes. Ensure that the calling job gets SIGKILLed after a minute, leaving behind the spooky/ghost/zombie container. Ensure that the container is killed on batch system shutdown (through the deferParam mechanism).
- Parameters:
tmp_path (pathlib.Path)
caching (bool)
detached (bool)
rm (bool)
deferParam (Optional[int])
- Return type:
None
- testDockerClean_CRx_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CRx_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CRx_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CRx_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CxD_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CxD_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CxD_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_CxD_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_Cxx_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_Cxx_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_Cxx_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_Cxx_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xRx_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xRx_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xRx_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xRx_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxD_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxD_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxD_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxD_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxx_FORGO(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxx_STOP(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxx_RM(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerClean_xxx_None(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerPipeChain(tmp_path, caching=False)¶
Test for piping API for dockerCall(). Using this API (activated when list of argument lists is given as parameters), commands a piped together into a chain. ex:
parameters=[ ['printf', 'x\n y\n'], ['wc', '-l'] ]should execute:printf 'x\n y\n' | wc -l- Parameters:
tmp_path (pathlib.Path)
caching (bool)
- Return type:
None
- testDockerPipeChainErrorDetection(tmp_path, caching=False)¶
By default, executing cmd1 | cmd2 | … | cmdN, will only return an error if cmdN fails. This can lead to all manor of errors being silently missed. This tests to make sure that the piping API for dockerCall() throws an exception if non-last commands in the chain fail.
- Parameters:
tmp_path (pathlib.Path)
caching (bool)
- Return type:
None
- testNonCachingDockerChain(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testNonCachingDockerChainErrorDetection(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerLogs(tmp_path, stream=False, demux=False)¶
Test for the different log outputs when deatch=False.
- Parameters:
tmp_path (pathlib.Path)
stream (bool)
demux (bool)
- Return type:
None
- testDockerLogs_Stream(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerLogs_Demux(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
- testDockerLogs_Demux_Stream(tmp_path)¶
- Parameters:
tmp_path (pathlib.Path)
- Return type:
None
