toil.test.sort.sortTest

Module Contents

Classes

SortTest

Tests Toil by sorting a file in parallel on various combinations of job stores and batch

Functions

runMain(options)

make sure the output file is deleted every time main is run

Attributes

logger

defaultLineLen

defaultLines

defaultN

toil.test.sort.sortTest.logger
toil.test.sort.sortTest.defaultLineLen
toil.test.sort.sortTest.defaultLines
toil.test.sort.sortTest.defaultN
toil.test.sort.sortTest.runMain(options)[source]

make sure the output file is deleted every time main is run

class toil.test.sort.sortTest.SortTest(methodName='runTest')[source]

Bases: toil.test.ToilTest, toil.batchSystems.mesos.test.MesosTestSupport

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Tests Toil by sorting a file in parallel on various combinations of job stores and batch systems.

testNo = 5
setUp()[source]

Hook method for setting up the test fixture before exercising it.

tearDown()[source]

Hook method for deconstructing the test fixture after testing it.

testAwsSingle()[source]
testAwsMesos()[source]
testFileMesos()[source]
testGoogleSingle()[source]
testGoogleMesos()[source]
testFileSingle()[source]
testFileSingleNonCaching()[source]
testFileSingleCheckpoints()[source]
testFileSingle10000()[source]
testFileGridEngine()[source]
testFileTorqueEngine()[source]
testSort()[source]
testMerge()[source]
testCopySubRangeOfFile()[source]
testGetMidPoint()[source]