toil.test.utils.toilDebugTest¶
Attributes¶
Classes¶
Test the toil debug-job command. |
Functions¶
Test toilDebugFile.printContentsOfJobStore(). |
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Fn for testFetchJobStoreFiles() and testFetchJobStoreFilesWSymlinks(). |
Test toilDebugFile.fetchJobStoreFiles() symlinks. |
Module Contents¶
- toil.test.utils.toilDebugTest.logger¶
- toil.test.utils.toilDebugTest.testJobStoreContents()[source]¶
Test toilDebugFile.printContentsOfJobStore().
Runs a workflow that imports ‘B.txt’ and ‘mkFile.py’ into the jobStore. ‘A.txt’, ‘C.txt’, ‘ABC.txt’ are then created. This checks to make sure these contents are found in the jobStore and printed.
- toil.test.utils.toilDebugTest.fetchFiles(symLink, jobStoreDir, outputDir)[source]¶
Fn for testFetchJobStoreFiles() and testFetchJobStoreFilesWSymlinks().
Runs a workflow that imports ‘B.txt’ and ‘mkFile.py’ into the jobStore. ‘A.txt’, ‘C.txt’, ‘ABC.txt’ are then created. This test then attempts to get a list of these files and copy them over into our output diectory from the jobStore, confirm that they are present, and then delete them.
- toil.test.utils.toilDebugTest.testFetchJobStoreFiles()[source]¶
Test toilDebugFile.fetchJobStoreFiles() symlinks.
- Return type:
None
- class toil.test.utils.toilDebugTest.DebugJobTest(methodName='runTest')[source]¶
Bases:
toil.test.ToilTest
Test the toil debug-job command.