toil.test.utils.toilDebugTest

Module Contents

Functions

workflow_debug_jobstore()
testJobStoreContents()	Test toilDebugFile.printContentsOfJobStore().
fetchFiles(symLink, jobStoreDir, outputDir)	Fn for testFetchJobStoreFiles() and testFetchJobStoreFilesWSymlinks().
testFetchJobStoreFiles()	Test toilDebugFile.fetchJobStoreFiles() symlinks.

Attributes

logger

toil.test.utils.toilDebugTest.logger

toil.test.utils.toilDebugTest.workflow_debug_jobstore()

Return type:

str

toil.test.utils.toilDebugTest.testJobStoreContents()

Test toilDebugFile.printContentsOfJobStore().

Runs a workflow that imports ‘B.txt’ and ‘mkFile.py’ into the jobStore. ‘A.txt’, ‘C.txt’, ‘ABC.txt’ are then created. This checks to make sure these contents are found in the jobStore and printed.

toil.test.utils.toilDebugTest.fetchFiles(symLink, jobStoreDir, outputDir)

Fn for testFetchJobStoreFiles() and testFetchJobStoreFilesWSymlinks().

Runs a workflow that imports ‘B.txt’ and ‘mkFile.py’ into the jobStore. ‘A.txt’, ‘C.txt’, ‘ABC.txt’ are then created. This test then attempts to get a list of these files and copy them over into our output diectory from the jobStore, confirm that they are present, and then delete them.

Parameters:

• symLink (bool) –

• jobStoreDir (str) –

• outputDir (str) –

toil.test.utils.toilDebugTest.testFetchJobStoreFiles()

Test toilDebugFile.fetchJobStoreFiles() symlinks.

Return type:

None