toil.test.src.resumabilityTest

Classes

TestResumability

https://github.com/BD2KGenomics/toil/issues/808

Functions

parent(job)

Set up a bunch of dummy child jobs, and a bad job that needs to be

chaining_parent(job)

Set up a failing job to chain to.

goodChild(job)

Does nothing.

badChild(job)

Fails the first time it's run, succeeds the second time.

Module Contents

class toil.test.src.resumabilityTest.TestResumability

https://github.com/BD2KGenomics/toil/issues/808

test(tmp_path)

Tests that a toil workflow that fails once can be resumed without a NoSuchJobException.

Parameters:

tmp_path (pathlib.Path)

Return type:

None

test_chaining(tmp_path)

Tests that a job which is chained to and fails can resume and succeed.

Parameters:

tmp_path (pathlib.Path)

Return type:

None

toil.test.src.resumabilityTest.parent(job)

Set up a bunch of dummy child jobs, and a bad job that needs to be restarted as the follow on.

Parameters:

job (toil.job.Job)

Return type:

None

toil.test.src.resumabilityTest.chaining_parent(job)

Set up a failing job to chain to.

Parameters:

job (toil.job.Job)

Return type:

None

toil.test.src.resumabilityTest.goodChild(job)

Does nothing.

Parameters:

job (toil.job.Job)

Return type:

None

toil.test.src.resumabilityTest.badChild(job)

Fails the first time it’s run, succeeds the second time.

Parameters:

job (toil.job.JobFunctionWrappingJob)

Return type:

None