toil.test.src.importExportFileTest

Classes

TestImportExportFile
RestartingJob	Class represents a unit of work in toil.

Functions

create_file(tmp_path, content[, executable])

Module Contents

toil.test.src.importExportFileTest.create_file(tmp_path, content, executable=False)

Parameters:

• tmp_path (pathlib.Path)

• content (str)

• executable (bool)

Return type:

pathlib.Path

class toil.test.src.importExportFileTest.TestImportExportFile

message_portion_1 = 'What do you get when you cross a seal and a polar bear?'

message_portion_2 = '  A polar bear.'

test_import_export_restart_true(tmp_path)

Parameters:

tmp_path (pathlib.Path)

Return type:

None

test_import_export_restart_false(tmp_path)

Parameters:

tmp_path (pathlib.Path)

Return type:

None

test_basic_import_export(tmp_path, subtests)

Ensures that uploaded files preserve their file permissions when they are downloaded again. This function checks that an imported executable file maintains its executability after being exported.

Parameters:

• tmp_path (pathlib.Path)

• subtests (pytest_subtests.SubTests)

Return type:

None

class toil.test.src.importExportFileTest.RestartingJob(msg_portion_file_id, trigger_file_id, message_portion_2)

Bases: toil.job.Job

Class represents a unit of work in toil.

Parameters:

• msg_portion_file_id (str)

• trigger_file_id (str)

• message_portion_2 (str)

msg_portion_file_id

trigger_file_id

message_portion_2

run(file_store)

Override this function to perform work and dynamically create successor jobs.

Parameters:

• fileStore – Used to create local and globally sharable temporary files and to send log messages to the leader process.

• file_store (toil.fileStores.abstractFileStore.AbstractFileStore)

Returns:

The return value of the function can be passed to other jobs by means of toil.job.Job.rv().

Return type:

str