toil.test.src.restartDAGTest

Attributes

logger

Classes

TestRestartDAG

Tests that restarted job DAGs don't run children of jobs that failed in the first run till the

Functions

passingFn(job[, file])	This function is guaranteed to pass as it does nothing out of the ordinary.
failingFn(job, failType, file)	This function is guaranteed to fail via a raised assertion, or an os.kill

Module Contents

toil.test.src.restartDAGTest.logger

class toil.test.src.restartDAGTest.TestRestartDAG

Tests that restarted job DAGs don’t run children of jobs that failed in the first run till the parent completes successfully in the restart.

testRestartedWorkflowSchedulesCorrectJobsOnFailedParent(tmp_path)

Parameters:

tmp_path (pathlib.Path)

Return type:

None

testRestartedWorkflowSchedulesCorrectJobsOnKilledParent(tmp_path)

Parameters:

tmp_path (pathlib.Path)

Return type:

None

toil.test.src.restartDAGTest.passingFn(job, file=None)

This function is guaranteed to pass as it does nothing out of the ordinary.

If “file” is provided, it will be created.

Parameters:

• file (Optional[pathlib.Path]) – The path of a file that must be created if provided.

• job (toil.job.Job)

Return type:

None

toil.test.src.restartDAGTest.failingFn(job, failType, file)

This function is guaranteed to fail via a raised assertion, or an os.kill

Parameters:

• job (toil.job.Job) – Job

• failType (str) – ‘raise’ or ‘kill

• file (pathlib.Path) – The path of a file that must be created.

Return type:

None