toil.test.src.jobFileStoreTest

Module Contents

Classes

JobFileStoreTest

Tests testing the methods defined in :class:toil.fileStores.abstractFileStore.AbstractFileStore.

Functions

fileTestJob(job, inputFileStoreIDs, testStrings, ...)	Test job exercises toil.fileStores.abstractFileStore.AbstractFileStore functions
simpleFileStoreJob(job)
fileStoreChild(job, testID1, testID2)

Attributes

logger
PREFIX_LENGTH
fileStoreString
streamingFileStoreString

toil.test.src.jobFileStoreTest.logger

toil.test.src.jobFileStoreTest.PREFIX_LENGTH = 200

class toil.test.src.jobFileStoreTest.JobFileStoreTest(methodName='runTest')

Bases: toil.test.ToilTest

Tests testing the methods defined in :class:toil.fileStores.abstractFileStore.AbstractFileStore.

testCachingFileStore()

testNonCachingFileStore()

testJobFileStore()

Tests case that about half the files are cached

testJobFileStoreWithBadWorker()

Tests case that about half the files are cached and the worker is randomly failing.

toil.test.src.jobFileStoreTest.fileTestJob(job, inputFileStoreIDs, testStrings, chainLength)

Test job exercises toil.fileStores.abstractFileStore.AbstractFileStore functions

toil.test.src.jobFileStoreTest.fileStoreString = 'Testing writeGlobalFile'

toil.test.src.jobFileStoreTest.streamingFileStoreString = 'Testing writeGlobalFileStream'

toil.test.src.jobFileStoreTest.simpleFileStoreJob(job)

toil.test.src.jobFileStoreTest.fileStoreChild(job, testID1, testID2)